somebody at the beginning of the thread pointed out that the resonate point changes as soon as you fret a chord. Which destroys his reasoning! The strings can travel futher easier by the neck than the bridge so there is more bass, if it's muddy get a different pickup! I have a cap on my Neck MV for using with a single channel amp, which lowers the bass as i turn down the MV. Gives me a very mellow distortion that is articulate.
I used to be into 24 fret guitars and high output pickups, then i though music was all about lead guitar. Today i realize the most interesting songs and musical pieces have interesting rhythm IMO. Not very many people i know outside of lead guitar players care to hear solo's.