Thank you for your analysis and corrections! Since I am making some mistakes in understanding things I'm going to say what my assumptions are about the relays. This might be wrong in part, and incomplete, and if you notice errors or want to add more or make corrections that is awesome.
Relay Functions
RYznw means relay for feature type z, variant n, circuit w. When the feature is enabled NO will be connected. Otherwise NC will be connected.
Channel relays:
RYC1w means "relay for channel 1, circuit w"
RYC2w means "relay for channel 2, circuit w"
RYC3w means "relay for channel e, circuit w"
RY3 is an additional mode relay for channel 3, used in the reverb
Mode relays
RYM1w Relay, mode 1, ch1/pos1, clean
RYM1 is an additional mode 1 relay
RYM2w Relay, mode 2, ch1/pos2, fat
RYM3w Relay, mode 3, ch1/pos3, tweed
RYM4w Relay, mose 4, ch2/pos1, edge
RYM5w Relay, mode 5, ch2/pos2, crunch
RYM6w Relay, mode 6, ch2/pos3, MarkI
RYM7w Relay, mode 7, ch3/pos1, MKIIC+
RYM8w Relay, mode 8, ch3/pos2, MKIV
RYM9w Relay, mode 9, ch3/pos3, Extreme
EQ
RYEQc Relay for EQ on, channel c
RYEQ1 eq on, ch1
RYEQ2 eq on, ch2
RYEQ3 eq on, ch3
Power mode
RYSEw single-ended power mode
RY100 90W ("100") power mode enables inner tube pair when not in single-ended mode
Other Relays
RYTPw outer tube screen control (?)
RYFXc Relay, FX loop enabled
RY-R Tube rectifier mode, patent# 5168438
RYMU mute mode, also lights the mute LED (?)
RYFB get pres. feedback from 8 vs 4 ohm tap
RYSM shorts 8 Ohm speaker output to GND?
Just keep in mind that the phase inverter circuit is a bit different than the designs you would encounter for Class A/B or traditional Simul-Class amps. Considering the 10W power mode is Class A only, C115 and C100 are more than likely used with the 10W power.
They relay name makes it look like C115 and C100 are used when channel 3 is active.
Didn't you say the icepick sound is worse when channel 3 is active?
The capacitor values are missing their units, they would be in pF. When the amp is at 45W or 90W, RYC3G connects the two phases with the 250pF cap, this will also be when RYSE1 is in its normally closed state to connect the bias to the control grids. In 10W mode, the bias circuit is disconnected from the one pair of tubes as this will be running in cathode bias power mode. I would not worry about the 250pF C110 as this is a basic plate-to-plate snubber. Since the phase inverter plates are 180° out of phase with each other, the capacitor serves to remove high ice pick frequencies. It also adds to stability. Typical range is usually 75pF to 100pF, making it larger will cut more ice from the tone.
I agree that C110 is a good thing and that 250pF might be an ok value. It is similar to what we see in other amps. If we read each side of the phase splitter as a voltage divider between the short circuit cap at 250pF and the pass cap at 0.1uF then it sort of seems to make sense.
I'm getting a little confused when I try to analyze the circuit though. Hopefully I'll sort this out for myself, but I see the frequency term cancelling out of the expression I have for the voltage, as though we are going to attenuate the same ar all frequencies. That has to do with the fact that I'm not analyzing the output impedance of the triode. If I can sort this out I'll plot the frequency response.
The 0.1uF pass cap is larger than we have on other amps. That affects the size we need C110 to be. My thought before was that we could be more aggressive here and either use smaller pass caps or a larger cap ar C110. And I don't see the need for this part of the circuit to have a different behavior for Channel 3. I think they got rid of the high cut to make the voicing more like the JPIIC+, which doesn't have the fearure. But let's see if we have the same understanding about the relay names and it will be easier to talk about.
So in 10W mode, half of the phase inverter is not used. So when RyC2G is in the NO position, that is more of a filter and part signal coupler from V7A to V7B. this will all be in the AC signal as the caps will block the DC voltage.
It looks like RYM9F for example might be "mode" 9, maybe the Extreme gain mode? And it would be the F=6th contact pair on that relay or gang of relays?
RYM9F, RYM8RL, and RY-FB I would assume are linked to the Extreme mode. Since the negative feedback circuit gets rewired from the 8 ohm tap to the 4 ohm tap, RYM9F un-shorts the
C63 cap that will cut some of the feed back signal. Not sure how RYM8RL is used. I have not seen the rest of the Mark V90 schematic as it is missing the relay control circuits. Probably why Mesa did not demand its removal as it is incomplete and not accurate past the initial release of the amp. they made changes in 2010 shortly after its release in 2009. It is unclear how many assembly revisions were made (change in components) or if there were other revisions to the main PCB.
If you really want to experiment with the power section of the Mark V, just make use of the FX loop, turn it on, and slave from another amp into the return of the Mark V90. That will disconnect the preamp completely as well as the GEQ circuit. At least that way you will be able to hear how the power portion of the amp will behave from another signal source. It may be preferable to make use of another tube amp instead of a solid state amp. If you did use a solid state amp for this trick you would need an isolation transformer typically used with signal splitters to decouple the two amp's power supplies. Lehel P-Split, or even the ebtech line level shifter would do the trick. If you go direct, not sure I would use a solid state amp for that. The last thing you would want is to sink DC current from the tube amp into the solid-state amp as the one with the larger power supply will always win. I found out the hard way what happens with the input of two different types of amps, I used the Line6 DL4 as a signal splitter from the guitar into a tube amp and solid state amp. That was a short test and did not work for long as the copper foil on the DL4 sort of vaporized. The circuit connected to the solid state amp (bass amp) wound up sinking current from the Mark V90. I was able to repair it with some wire jumpers. At least it did not fry any parts. I did get it working again but if it was dead, not a huge loss.
Thank you! I would not have expected that to happen either, and it is a good warning. It is surprising to me that there could be so much ground current between the two amps. If ground lift is off (as normal) then they should be connected to the same electrical ground or neutral, so noise can happen and small currents can flow--ugly enough--but no big currents. If ground lift is enabled on one amp then the other amp should be able to pull the isolated ground. Again there can be noise but things should work. So that is my idea but I know it is wrong because both you and others have reported large currents like that. Do you understand how this is possible?
Anyway I definitely agree with you that more tests are needed before changes make sense. The big one anyway is that thing you showed on the scope, so I'll try to observe something like that.