Stunning work!
From what I have gleaned between schematics and looking at exactly one ++ mod in person, the mod is:
1) A 3.3M + 20pF cap (in series) are added parallel to the existing 3.3M + 20pF cap (that are in parallel) that bridges across the lead channel gain stages. The tonal change by itself was pretty subtle if memory serves.
2) A 15uF tant cap was added across the 1.5K cathode resistor in the third gain stage (the one that drives the reverb tank and the 'send' part of the effects loop). This has the largest impact on the sound - the amp gets significantly louder, and the level driving the EQ is significantly hotter.
3) A 330K resistor is added in parallel with the 'lead drive' pot, and the 680K series resistance is increase to 1M. This cuts the signal going into the lead gain stages and softens the distortion a bit.
In some situations I find #2 a bit too much, and it can really eat into the clean headroom of the preamp, however you can get a more aggressive lead tone with it engaged. In one of my preamp boards, I added a Vactrol to this cap so that it only kicks in when then lead mode is engaged, and that has been my favorite iteration of the ++ mod.
EDIT: in the Mark 3, the cap in #2 above was switchable in and out via a relay in that amps 'Rhythm 2' channel. In addition, the voltage divider leading to the 'send' of the amp also kicked in (R130), to reduce the gain jump when adding in the cathode bias cap. The R2 mod involved converting R130 into a pot so you could dial in the amount of gain reduction to your tastes.